[FIXED] Creating a Confidence Ellipse in a scatterplot using matplotlib

Issue

How do I create a confidence ellipse in a scatterplot using matplotlib?

The following code works until creating scatter plot. Then, is anyone familiar with putting confidence ellipses over the scatter plot?

import numpy as np
import matplotlib.pyplot as plt
x = [5,7,11,15,16,17,18]
y = [8, 5, 8, 9, 17, 18, 25]

plt.scatter(x,y)
plt.show()

Following is the reference for Confidence Ellipses from SAS.

http://support.sas.com/documentation/cdl/en/grstatproc/62603/HTML/default/viewer.htm#a003160800.htm

The code in sas is like this:

proc sgscatter data=sashelp.iris(where=(species="Versicolor"));
  title "Versicolor Length and Width";
  compare y=(sepalwidth petalwidth)
          x=(sepallength petallength)
          / reg ellipse=(type=mean) spacing=4;
run;

Solution

The following code draws a one, two, and three standard deviation sized ellipses:

x = [5,7,11,15,16,17,18]
y = [8, 5, 8, 9, 17, 18, 25]
cov = np.cov(x, y)
lambda_, v = np.linalg.eig(cov)
lambda_ = np.sqrt(lambda_)
from matplotlib.patches import Ellipse
import matplotlib.pyplot as plt
ax = plt.subplot(111, aspect='equal')
for j in xrange(1, 4):
    ell = Ellipse(xy=(np.mean(x), np.mean(y)),
                  width=lambda_[0]*j*2, height=lambda_[1]*j*2,
                  angle=np.rad2deg(np.arccos(v[0, 0])))
    ell.set_facecolor('none')
    ax.add_artist(ell)
plt.scatter(x, y)
plt.show()

Answered By - Jaime